Science-Watching: Proton-Coupled Energy Transfer/Omicron Spike Function

[from Science, First Release Notification for July 21]

Proton-Coupled Energy Transfer in Molecular Triads

Abstract

A photochemical mechanism was experimentally discovered and denoted proton-coupled energy transfer (PCEnT). A series of anthracenephenolpyridine triads formed the local excited anthracene state after light excitation at ca. 400 nm, which led to fluorescence around 550 nm from the phenolpyridine unit. Direct excitation of phenolpyridine would have required light around 330 nm, but the coupled proton transfer within the phenolpyridine unit lowered its excited state energy so that it could accept excitation energy from anthracene. Singlet-singlet energy transfer thus occurred despite the lack of spectral overlap between the anthracene fluorescence and the phenolpyridine absorption. Moreover, theoretical calculations indicated negligible charge transfer between the anthracene and phenolpyridine units. PCEnT was suggested as an elementary reaction of possible relevance to biological systems and future photonic devices.

Access the full paper [via institutional access or paid download].

Omicron Spike Function and Neutralizing Activity Elicited by a Comprehensive Panel of Vaccines

Abstract

The SARS-CoV-2 Omicron variant of concern comprises several sublineages with BA.2 and BA.2.12.1 having replaced the previously dominant BA.1, and BA.4 and BA.5 increasing in prevalence worldwide. We show that the large number of Omicron sublineage spike mutations lead to enhanced ACE2 binding, reduced fusogenicity, and severe dampening of plasma neutralizing activity elicited by infection or seven clinical vaccines relative to the ancestral virus. Administration of a homologous or heterologous booster based on the Wuhan-Hu-1 spike sequence markedly increased neutralizing antibody titers and breadth against BA.1, BA.2, BA.2.12.1, and BA.4/5 across all vaccines evaluated. Our data suggest that although Omicron sublineages evade polyclonal neutralizing antibody responses elicited by primary vaccine series, vaccine boosters may provide sufficient protection against Omicron-induced severe disease.

Read the full paper. [Archived PDF]

Essay 89: Physics AI Predicts That Earth Goes Around the Sun

from Nature Briefing:

Hello Nature readers,

Today we learn that a computer Copernicus has rediscovered that Earth orbits the Sun, ponder the size of the proton and see a scientific glassblower at work.

Physicists have designed artificial intelligence that thinks like the astronomer Nicolaus Copernicus by realizing the Sun must be at the center of the Solar System. (NASA/JPL/SPL)

AI ‘Discovers’ That Earth Orbits the Sun [PDF]

A neural network that teaches itself the laws of physics could help to solve some of physics’ deepest questions. But first it has to start with the basics, just like the rest of us. The algorithm has worked out that it should place the Sun at the centre of the Solar System, based on how movements of the Sun and Mars appear from Earth.

The machine-learning system differs from others because it’s not a black that spits out a result based on reasoning that’s almost impossible to unpick. Instead, researchers designed a kind of ‘lobotomizedneural network that is split into two halves and joined by just a handful of connections. That forces the learning half to simplify its findings before handing them over to the half that makes and tests new predictions.

Next FDA Chief Will Face Ongoing Challenges

U.S. President Donald Trump has nominated radiation oncologist Stephen Hahn to lead the Food and Drug Administration (FDA). If the Senate confirms Hahn, who is the chief medical executive of the University of Texas MD Anderson Cancer Center, he’ll be leading the agency at the centre of a national debate over e-cigarettes, prompted by a mysterious vaping-related illness [archived PDF] that has made more than 2,000 people sick. A former FDA chief says Hahn’s biggest challenge will be navigating a regulatory agency under the Trump administration, which has pledged to roll back regulations.


Do We Know How Big a Proton Is?
[PDF]

A long-awaited experimental result has found the proton to be about 5% smaller than the previously accepted value. The finding seems to spell the end of the ‘proton radius puzzle’: the measurements disagreed if you probed the proton with ordinary hydrogen, or with exotic hydrogen built out of muons instead of electrons. But solving the mystery will be bittersweet: some scientists had hoped the difference might have indicated exciting new physics behind how electrons and muons behave.

Contingency Plans for Research After Brexit

The United Kingdom should boost funding for basic research and create an equivalent of the prestigious European Research Council (ERC) if it doesn’t remain part of the European Union’s flagship Horizon Europe research-funding program [archived PDF]. That’s the conclusion of an independent review of how UK science could adapt and collaborate internationally after Brexit — now scheduled for January 31, 2020.

Nature’s 150th anniversary

A Century and a Half of Research and Discovery

This week is a special one for all of us at Nature: it’s 150 years since our first issue, published in November 1869. We’ve been working for well over a year on the delights of our anniversary issue, which you can explore in full online.

10 Extraordinary Nature Papers

A series of in-depth articles from specialists in the relevant fields assesses the importance and lasting impact of 10 key papers from Nature’s archive. Among them, the structure of DNA, the discovery of the hole in the ozone layer above Antarctica, our first meeting with Australopithecus and this year’s Nobel-winning work detecting an exoplanet around a Sun-like star.

A Network of Science

The multidisciplinary scope of Nature is revealed by an analysis of more than 88,000 papers Nature has published since 1900, and their co-citations in other articles. Take a journey through a 3D network of Nature’s archive in an interactive graphic. Or, let us fly you through it in this spectacular 5-minute video.

Then dig deeper into what scientists learnt from analyzing tens of millions of scientific articles for this project.

150 Years of Nature, in Graphics

An analysis of the Nature archive reveals the rise of multi-author papers, the boom in biochemistry and cell biology, and the ebb and flow of physical chemistry since the journal’s first issue in 1869. The evolution in science is mirrored in the top keywords used in titles and abstracts: they were ‘aurora’, ‘Sun’, ‘meteor’, ‘water’ and ‘Earth’ in the 1870s, and ‘cell’, ‘quantum’, ‘DNA’, ‘protein’ and ‘receptor’ in the 2010s.

Evidence in Pursuit of Truth

A century and a half has seen momentous changes in science, and Nature has changed along with it in many ways, says an Editorial in the anniversary edition. But in other respects, Nature now is just the same as it was at the start: it will continue in its mission to stand up for research, serve the global research community and communicate the results of science around the world.

Features & Opinion

Nature covers: from paste-up to Photoshop

Nature creative director Kelly Krause takes you on a tour of the archive to enjoy some of the journal’s most iconic covers, each of which speaks to how science itself has evolved. Plus, she touches on those that didn’t quite hit the mark, such as an occasion of “Photoshop malfeasance” that led to Dolly the sheep sporting the wrong leg.

Podcast: Nature bigwigs spill the tea

In this anniversary edition of BackchatNature editor-in-chief Magdalena Skipper, chief magazine editor Helen Pearson and editorial vice president Ritu Dhand take a look back at how the journal has evolved over 150 years, and discuss the part that Nature can play in today’s society. The panel also pick a few of their favorite research papers that Nature has published, and think about where science might be headed in the next 150 years.

Where I Work

Scientific glassblower Terri Adams uses fire and heavy machinery to hand-craft delicate scientific glass apparatus. “My workbench hosts an array of tools for working with glass, many of which were custom-made for specific jobs,” says Adams. “Each tool reminds me of what I first used it for and makes me consider how I might use it again.” (Leonora Saunders for Nature)

Quote of the Day

“At the very least … we should probably consider no longer naming *new* species after awful humans.”

Scientists should stop naming animals after terrible people — and consider renaming the ones that already are, argues marine conservation biologist and science writer David Shiffman. (Scientific American)

Yesterday was Marie Skłodowska Curie’s birthday, and for the occasion, digital colorist Marina Amaral breathed new life into a photo of Curie in her laboratory

(If you have recommended people before and you want them to count, please ask them to email me with your details and I will make it happen!) Your feedback, as always, is very welcome at briefing@nature.com.

Flora Graham, senior editor, Nature Briefing